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Host-fungus interactions : Methods and protocols methods and protocols / edited by Alexandra C. Brand, Donna M. MacCallum.

Contributor(s): Brand, Alexandra C | MacCallum, Donna MMaterial type: TextTextSeries: Methods in molecular biology (Clifton, N.J.): v. 845.; Springer protocols: Publisher: New York : Humana Press : Springer, c2012Description: xvi, 597 p. : ill. (some col.) ; 27 cmISBN: 9781617795381 (alk. paper); 1617795399 (eISBN); 9781617795398 (eISBN)Subject(s): Fungi -- pathogenicity -- Laboratory Manuals | Genetic Techniques -- Laboratory Manuals | Host-Pathogen Interactions -- Laboratory Manuals | Mycoses -- Laboratory Manuals | Candida albicans | FungiDDC classification: 589.2 LOC classification: QH506 | .M45 v.845
Contents:
Gene deletion in Candida albicans wild-type strains using the SAT1-flipping strategy / Christoph Sasse and Joachim Morschhauser -- Mini-blaster-mediated targeted gene disruption and marker complementation in candida albicans / Shantanu Ganguly and Aaron P. Mitchell -- Rapid detection of aneuploidy following the generation of mutants in candida albicans / Megan D. Lenardon and Andre Nantel -- Agrobacterium-mediated insertional mutagenesis in histoplasma capsulatum / Olga Zemska and Chad A. Rappleye -- Targeted gene disruption in cryptococcus neoformans using double-joint PCR with split dominant selectable markers / Min Su Kim, Seo-Young Kim, Kwang-Woo Jung, and Yong-Sun Bahn -- Multiple gene deletion in cryptococcus neoformans using the Cre-lox system / Lorina G. Baker and Jennifer K. Lodge -- Gene disruption in aspergillus fumigatus using a PCR-based strategy and in vivo recombination in yeast / Iran Malavazi and Gustavo Henrique Goldman -- Targeted gene deletion in aspergillus fumigatus using the hygromycin-resistance split-marker approach / Fabrice N. Gravelat, David S. Askew, and Donald C. Sheppard -- Gene disruption in coccidioides using hygromycin or phleomycin resistance markers / Chiung-Yu Hung, Hua Zhang Wise, and Garry T. Cole --
RNAi-based gene silencing using a GFP sentinel system in histoplasma capsulatum / Brian H. Youseff and Chad A. Rappleye -- RNA interference in cryptococcus neoformans / Michael L. Skowyra and Tamara L. Doering -- Gene knockdown in paracoccidioides brasiliensis using antisense RNA / Joao F. Menino, Agostinho J. Almeida, and Fernando Rodrigues --
Tetracycline-inducible gene expression in candida albicans / Michael Weyler and Joachim Morschhauser -- Galactose-inducible promoters in cryptococcus neoformans var. grubii / Lorina G. Baker and Jennifer K. Lodge -- Modular gene over-expression strategies for candida albicans / Vitor Cabral, Murielle Chauvel, Arnaud Firon, Melanie Legrand, Audrey Nesseir, Sophie Bachellier- Bassi, Yogesh Chaudhari, Carol A. Munro, and Christophe d'Enfert --
Interactions between macrophages and cell wall oligosaccharides of candida albicans / Hector M. Mora-Montes, Christopher McKenzie, Judith M. Bain, Leanne E. Lewis, Lars P. Erwig, and Neil A. R. Gow -- Murine bone marrow-derived dendritic cells and t-cell activation by candida albicans / Joanne Gibson, Neil A. R. Gow, and Simon Y. C. Wong -- Phagocytosis and intracellular killing of candida albicans by murine polymorphonuclear neutrophils / Alieke G. Vonk, Mihai G. Netea, and Bart Jan Kullberg -- Human oral keratinocytes: a model system to analyze host-pathogen interactions / Torsten Wollert, Christiane Rollenhagen, George M. Langford, and Paula Sundstrom -- Simple assays for measuring innate interactions with fungi / Ann M. Kerrigan, Maria da Gloria Teixeira de Sousa, and Gordon D. Brown -- Binding and uptake of candida albicans by human monocyte-derived dendritic cells / Annemiek B. van Spriel and Alessandra Cambi -- Immune responses to candida albicans in models of in vitro reconstituted human oral epithelium / Jeanette Wagener, Daniela Mailander-Sanchez, and Martin Schaller -- Analysis of host-cell responses by immunoblotting, ELISA, and real-time PCR / David L. Moyes and Julian R. Naglik -- In vitro model of invasive pulmonary aspergillosis in the human alveolus / Lea Gregson, William W. Hope, and Susan J. Howard -- Biofilm formation studies in microtiter plate format / Marta Riera, Emilia Moreno-Ruiz, Sophie Goyard, Christophe d'Enfert, and Guilhem Janbon --
Transcript profiling using ESTs from paracoccidioides brasiliensis in models of infection / Alexandre Melo Bailao, Maristela Pereira, Silvia Maria Salem-Izacc, Clayton Luiz Borges, and Celia Maria de Almeida Soares -- Laser capture microdissection of candida albicans from host tissue / Caroline Westwater and David A. Schofield -- Isolation and amplification of fungal RNA for microarray analysis from host samples / Anja Luttich, Sascha Brunke, and Bernhard Hube --
Cytokine measurement using cytometric bead arrays / Luis Castillo and Donna M. MacCallum -- Transcript profiling of the murine immune response to invasive aspergillosis / Zaneeta Dhesi, Susanne Herbst, and Darius Armstrong-James --
Caenorhabditis elegans: a nematode infection model for pathogenic fungi / Maged Muhammed, Jeffrey J. Coleman, and Eleftherios Mylonakis -- Drosophila melanogaster as a model organism for invasive aspergillosis / Michail S. Lionakis and Dimitrios P. Kontoyiannis -- Galleria mellonella as a model for fungal pathogenicity testing / John Fallon, Judy Kelly, and Kevin Kavanagh -- Embryonated chicken eggs as alternative infection model for pathogenic fungi / Ilse D. Jacobsen, Katharina Groe, and Bernhard Hube --
Mouse intravenous challenge models and applications / Donna M. MacCallum -- A nebulized intra-tracheal rat model of invasive pulmonary aspergillosis / Guillaume Desoubeaux and Jacques Chandenier -- Invasive models of histoplasmosis / A. George Smulian -- Murine model of concurrent oral and vaginal candida albicans colonisation / Durdana Rahman, Mukesh Mistry, Selvam Thavaraj, Julian R. Naglik, and Stephen J. Challacombe -- A luciferase reporter for gene expression studies and dynamic imaging of superficial candida albicans infections / Donatella Pietrella, Brice Enjalbert, Ute Zeidler, Sadri Znaidi, Anna Rachini, Anna Vecchiarelli, and Christophe d'Enfert -- Modeling of fungal biofilms using a rat central vein catheter / Jeniel E. Nett, Karen Marchillo, and David R. Andes -- Orogastrointestinal model of mucosal and disseminated candidiasis / Karl V. Clemons and David A. Stevens -- A nonlethal murine cutaneous model of invasive aspergillosis / Ronen Ben-Ami and Dimitrios P. Kontoyiannis.
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Includes bibliographical references and index.

Part I: Gene disruption -- chapter 1. Gene deletion in Candida albicans wild-type strains using the SAT1-flipping strategy / Christoph Sasse and Joachim Morschhauser -- chapter 2. Mini-blaster-mediated targeted gene disruption and marker complementation in candida albicans / Shantanu Ganguly and Aaron P. Mitchell -- chapter 3. Rapid detection of aneuploidy following the generation of mutants in candida albicans / Megan D. Lenardon and Andre Nantel -- chapter 4. Agrobacterium-mediated insertional mutagenesis in histoplasma capsulatum / Olga Zemska and Chad A. Rappleye -- chapter 5. Targeted gene disruption in cryptococcus neoformans using double-joint PCR with split dominant selectable markers / Min Su Kim, Seo-Young Kim, Kwang-Woo Jung, and Yong-Sun Bahn -- chapter 6. Multiple gene deletion in cryptococcus neoformans using the Cre-lox system / Lorina G. Baker and Jennifer K. Lodge -- chapter 7. Gene disruption in aspergillus fumigatus using a PCR-based strategy and in vivo recombination in yeast / Iran Malavazi and Gustavo Henrique Goldman -- chapter 8. Targeted gene deletion in aspergillus fumigatus using the hygromycin-resistance split-marker approach / Fabrice N. Gravelat, David S. Askew, and Donald C. Sheppard -- chapter 9. Gene disruption in coccidioides using hygromycin or phleomycin resistance markers / Chiung-Yu Hung, Hua Zhang Wise, and Garry T. Cole --

Part II: Modulation of gene expression: RNAi gene knockdown -- chapter 10. RNAi-based gene silencing using a GFP sentinel system in histoplasma capsulatum / Brian H. Youseff and Chad A. Rappleye -- chapter 11. RNA interference in cryptococcus neoformans / Michael L. Skowyra and Tamara L. Doering -- chapter 12. Gene knockdown in paracoccidioides brasiliensis using antisense RNA / Joao F. Menino, Agostinho J. Almeida, and Fernando Rodrigues --

Part III: Modulation of gene expression: regulatable promoters -- chapter 13. Tetracycline-inducible gene expression in candida albicans / Michael Weyler and Joachim Morschhauser -- chapter 14. Galactose-inducible promoters in cryptococcus neoformans var. grubii / Lorina G. Baker and Jennifer K. Lodge -- chapter 15. Modular gene over-expression strategies for candida albicans / Vitor Cabral, Murielle Chauvel, Arnaud Firon, Melanie Legrand, Audrey Nesseir, Sophie Bachellier- Bassi, Yogesh Chaudhari, Carol A. Munro, and Christophe d'Enfert --

Part IV: Host responses to infection in virto -- chapter 16. Interactions between macrophages and cell wall oligosaccharides of candida albicans / Hector M. Mora-Montes, Christopher McKenzie, Judith M. Bain, Leanne E. Lewis, Lars P. Erwig, and Neil A. R. Gow -- chapter 17. Murine bone marrow-derived dendritic cells and t-cell activation by candida albicans / Joanne Gibson, Neil A. R. Gow, and Simon Y. C. Wong -- chapter 18. Phagocytosis and intracellular killing of candida albicans by murine polymorphonuclear neutrophils / Alieke G. Vonk, Mihai G. Netea, and Bart Jan Kullberg -- chapter 19. Human oral keratinocytes: a model system to analyze host-pathogen interactions / Torsten Wollert, Christiane Rollenhagen, George M. Langford, and Paula Sundstrom -- chapter 20. Simple assays for measuring innate interactions with fungi / Ann M. Kerrigan, Maria da Gloria Teixeira de Sousa, and Gordon D. Brown -- chapter 21. Binding and uptake of candida albicans by human monocyte-derived dendritic cells / Annemiek B. van Spriel and Alessandra Cambi -- chapter 22. Immune responses to candida albicans in models of in vitro reconstituted human oral epithelium / Jeanette Wagener, Daniela Mailander-Sanchez, and Martin Schaller -- chapter 23. Analysis of host-cell responses by immunoblotting, ELISA, and real-time PCR / David L. Moyes and Julian R. Naglik -- chapter 24. In vitro model of invasive pulmonary aspergillosis in the human alveolus / Lea Gregson, William W. Hope, and Susan J. Howard -- chapter 25. Biofilm formation studies in microtiter plate format / Marta Riera, Emilia Moreno-Ruiz, Sophie Goyard, Christophe d'Enfert, and Guilhem Janbon --

Part V: Fungal responses during infection -- chapter 26. Transcript profiling using ESTs from paracoccidioides brasiliensis in models of infection / Alexandre Melo Bailao, Maristela Pereira, Silvia Maria Salem-Izacc, Clayton Luiz Borges, and Celia Maria de Almeida Soares -- chapter 27. Laser capture microdissection of candida albicans from host tissue / Caroline Westwater and David A. Schofield -- chapter 28. Isolation and amplification of fungal RNA for microarray analysis from host samples / Anja Luttich, Sascha Brunke, and Bernhard Hube --

Part VI: Host responses to infection in vivo -- chapter 29. Cytokine measurement using cytometric bead arrays / Luis Castillo and Donna M. MacCallum -- chapter 30. Transcript profiling of the murine immune response to invasive aspergillosis / Zaneeta Dhesi, Susanne Herbst, and Darius Armstrong-James --

Part VII: Non-mammalian model systems for host-fungal interactions -- chapter 31. Caenorhabditis elegans: a nematode infection model for pathogenic fungi / Maged Muhammed, Jeffrey J. Coleman, and Eleftherios Mylonakis -- chapter 32. Drosophila melanogaster as a model organism for invasive aspergillosis / Michail S. Lionakis and Dimitrios P. Kontoyiannis -- chapter 33. Galleria mellonella as a model for fungal pathogenicity testing / John Fallon, Judy Kelly, and Kevin Kavanagh -- chapter 34. Embryonated chicken eggs as alternative infection model for pathogenic fungi / Ilse D. Jacobsen, Katharina Groe, and Bernhard Hube --

Part VIII: Mammalian hosts as infection models -- chapter 35. Mouse intravenous challenge models and applications / Donna M. MacCallum -- chapter 36. A nebulized intra-tracheal rat model of invasive pulmonary aspergillosis / Guillaume Desoubeaux and Jacques Chandenier -- chapter 37. Invasive models of histoplasmosis / A. George Smulian -- chapter 38. Murine model of concurrent oral and vaginal candida albicans colonisation / Durdana Rahman, Mukesh Mistry, Selvam Thavaraj, Julian R. Naglik, and Stephen J. Challacombe -- chapter 39. A luciferase reporter for gene expression studies and dynamic imaging of superficial candida albicans infections / Donatella Pietrella, Brice Enjalbert, Ute Zeidler, Sadri Znaidi, Anna Rachini, Anna Vecchiarelli, and Christophe d'Enfert -- chapter 40. Modeling of fungal biofilms using a rat central vein catheter / Jeniel E. Nett, Karen Marchillo, and David R. Andes -- chapter 41. Orogastrointestinal model of mucosal and disseminated candidiasis / Karl V. Clemons and David A. Stevens -- chapter 42. A nonlethal murine cutaneous model of invasive aspergillosis / Ronen Ben-Ami and Dimitrios P. Kontoyiannis.

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